Bayesian Animal Models

Documentation for package ‘AnimalINLA’ version 1.2

AnimalINLA-package	Bayesian Animal Models
Ainverse	Internal functions
animal.inla	Bayesian analyses of Animal Model using Integrated Nested Laplace Approximation
AnimalINLA	Bayesian Animal Models
CheckPedigree	Internal functions
checkPedigree	Internal functions
CheckPedigreeZ	Internal functions
checkPedigreeZ	Internal functions
compute.Ainverse	Computing the non-zero elements and the inverse of the additive relationship matrix, A^{-1}
compute.Zinverse	Computing the non-zero elements and the inverse of the sex-linked additive relationship matrix Z^{-1}
inla.complete.Cmatrix	Internal functions
inverse.S	Internal functions
invS.v	Internal functions
lincomb	Internal functions
lincombinput	Internal functions
plot.Animalinla	Default AnimalINLA plotting.
Q.elements	Internal functions
rapid.inbreedingZ	Internal functions
RenamePedigree	Internal functions
RenamePedigreeZ	Internal functions
simulate.breeding	Simulating breeding values from the inverse of the additive relationship matrix, A^{-1}
simulate.breeding.values	Internal functions
simulate.data	Simulating Gaussian, binomial or Poisson data
SortPedigree	Internal functions
SortPedigreeZ	Internal functions
sparrowBinomial	Synthetic Binomial data
sparrowGaussian	Synthetic Gaussian data
sparrowpedigree	Wild House Sparrow Pedigree
sparrowPoisson	Synthetic Poisson data
summary.Animalinla	Summary for a AnimalINLA fit
Zsparrowpedigree	Wild House Sparrow Pedigree with sex